API URLs now resolve relative to the page origin, working for both local dev (via Vite proxy) and remote production deployments.
Also fixes useFullTranscript which had a double /api/v1 path bug when VITE_API_BASE_URL was set.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Without rehype-raw, ReactMarkdown escaped the raw <mark> HTML injected
by highlightTerms(), showing literal tags instead of yellow highlights.
Now 30 marks render with correct bg-yellow-200 (#FEF08A) background.
- Vite dev server doesn't proxy /api/v1/v2/ paths to backend
- Changed fetch URL and getHighlightUrl to use http://localhost:8000
- Fixed inline citation highlight URLs in buildCitationUrl
- Cleaned up debug code
- Added sub_question_text to frontend SourceMetadata type
- SubQuestionSection enriches sources with parent sub-question text
- buildCitationUrl routes to highlight page when sub_question_text present
- processCitations threads highlightReadyKeys through inline citations
- citationParser.ts: extractCitedSources() parses answer text for [citations],
resolves against SourceMetadata, returns deduplicated cited sources
- ResponsePanel.tsx: useEffect fires POST /api/v1/v2/highlights/batch after
answer renders; View PDF link upgrades in-place to highlighted HTML when
batch completes; stays as raw PDF on failure
- Updated plan: LLM-based relevance detection, eager background computation,
single batched LLM call, sqlite cache, regex sentence splitter
- 45 frontend tests: 28 citationParser + 17 ResponsePanel (including 4 new
sub-question highlight tests)
LLMs may cite chunks from one sub-question's context inside another sub-question's answer section. Previously, processCitationsForSubq only looked up the current sub-question's sources, leaving cross-referenced citations unlinked. Now SubQuestionSection passes all sub-question sources and uses processCitations with a combined flat lookup.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
The per-sub-question filter was all-or-nothing: if the LLM returned
9 scores for 10 chunks (common with qwen3.5-35b), every chunk was
discarded and the user got 'no relevant information found'.
Now: fewer scores → pad with 0.0; more scores → truncate. Changed
from error→warning since this is recoverable.
Also improve LTT page UI: sources collapsed by default in per-sub-q
sections, and the 'Your question' text now shows the full question
instead of being truncated.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Redesign ResponsePanel with SubQuestionSections component that parses answer markdown on ## Sub-question N: boundaries and renders per-sub-question cards with headers, ReactMarkdown body, and collapsible sources scoped to each section. Extract FlatResponse for backward compatibility when subQuestionSources is null. Add buildCitationLookupForSubq and processCitationsForSubq for per-sub-question citation lookup scope isolation. Add anchor links in ExtractedQuestionsDisplay that smooth-scroll to matching ResponsePanel sections. Pass subQuestionSources through LTTPage.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Convert /query endpoint from synchronous JSON to Server-Sent Events (SSE)
streaming. The frontend now receives extracted_questions as soon as the
first LLM call completes, without waiting for retrieval, filtering, and
answer generation.
Backend:
- Add StreamingQueryEvent union type (Decomposed, Retrieving, Filtering,
Generating, Completed, Error)
- Convert /query to return StreamingResponse with SSE format
- Yield events after each pipeline phase
Frontend:
- Add queryDocumentStream() using fetch + ReadableStream
- Add useQueryDocumentStream() hook with phase-aware state
- Update LTTPage to use streaming instead of mutation
- Update ResponsePanel to show phase messages (Searching documents...,
Filtering passages..., Generating answer...)
- Update ExtractedQuestionsDisplay to accept null
Tests:
- Update query_flow e2e test to mock queryDocumentStream
- 84/85 tests pass (1 pre-existing failure from removed file-input)
ResponsePanel now calls processCitations() on answer text before rendering.
Custom ReactMarkdown 'a' component adds target="_blank" to all citation links.
Adds tests for citation link rendering and unmatched citation fallback.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
ResponsePanel and ChunkList View PDF links now open /pdf-viewer page instead of raw PDF download.
Update ChunkList test mock from getChunkPdfUrl to getPdfViewerUrl.
Add DOMMatrix polyfill to test setup for react-pdf/jsdom compatibility.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
- Add page_number and chunk_file_path to SourceMetadata model and query router
- Add GET /chunks/{file_path}/pdf endpoint with path traversal protection
- Add View PDF links in ResponsePanel source cards and ChunkList component
- Update TypeScript types and API helper for chunk PDF URLs
- Add backend tests (5) and frontend ChunkList tests (7)
- Update enhancement plan: all 3 features complete
- Add react-router-dom with NavBar component (LTT + RAG Database tabs)
- Extract AppContent into LTTPage, add RAGDatabasePage placeholder
- Refactor App.tsx to BrowserRouter + Routes layout
- Switch ResponsePanel to react-markdown for rich formatting
- Fix ResponsePanel test for markdown rendering
- Update RAG prompt to cite source name instead of number
- Save Phase 1 enhancement plan (.plans/phase1_enhancement_plan.md)
Displays bullet-point answer with source metadata cards. Handles empty, loading, error, and success states.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Woody